WORMHOLE - Downloads

Wormhole: Ortholog Prediction
through Machine Learning

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Downloadable data files

WORMHOLE IDs:

WORMHOLE-canonical-IDs.tar.gz – a complete list of the canonical IDs in the WORMHOLE database
WORMHOLE-aliases.tar.gz – a list of all aliases for genes contained in the WORMHOLE database for ID mapping

Reference Datasets:

PANTHER-LDO-ortholog-pairs.tar.gz – PANTHER least diverged ortholog (LDO) reference set
FOSTA-FEPs.tar.gz – FOSTA functinally equivalent proteins (FEPs) reference set

WORMHOLE Orthologs:

WORMHOLE-ortholog-pairs.tar.gz – All WORMHOLE ortholog predictions and confidence scores with support vector machine (SVM) classifiers trained on PANTHER LDO reference ortholog pairs